Although shot and with a wound in his side, Joe's clothing has no bullet holes.
During the gun battle in the garden with the hand gun that he took from the dead pilot, Jack has an endless supply of bullets without having any spare magazines for the weapon.
The mass of roots which emerges from the original seed exceeds the size of the interior of the seed.
Radar screens do not have tracked images which fade in and out in time to a beeping noise.
Shots of the attack aircraft after their attack show all of their ordnance still in place.
Dr. Stein states that Tetracentron is an extinct genus of plant. It's not entirely correct: out of five knows species, one, T. sinense, is still growing in Asia. However, she might've been confused if the species she encountered was T. hopkinsii, fossils of which were found in British Columbia, Canada, where the film was shot.
While looking up the license plate the computer screen goes black. The user says it is off-line, and corrects the problem by plugging in what appears to be an Ethernet cable. Disconnecting from a network does not cause a screen to go to black; disconnecting a power cord does that.
First, a person is asked to walk slowly in the garden because plants are sensitive. Later on, the same garden has security staff with permission to fire many rounds of bullets on Joe and Kat, that would rather terrorize the sensitive plants.
It has not been clarified why the three helicopters had to fly right in to the middle of growing roots. They should have fired missiles from a safe faraway distance to where they can see roots growing. Cost them their lives.
Jack states that the government has been monitoring Frame's communications, yet he later indicates that the government is unaware of Frame's location in what is obviously a moderately large and permanent research facility.
No one shoots at an approaching helicopter just like that, that too without any warning to stay away. Some important government authority or private wealthy man could be on the helicopter and it would have heavy consequences if such a person is hurt or dead. They should first have tried to contact the helicopter.
The agent (Jack) picks up Jocelyn he says; "You may have knowledge of a geological catastrophe." A giant plant would be a biological (botanical) catastrophe. While the agent might not know the difference, a person with training in biology would, and would not continue to repeat and amplify the error in the following conversation.