Shortly before the fast going captured train is stopped by ropes tightened across the rails, there are a number of shots in which there is no one on the second wagon of the train. It is obvious from the foregoing shots that there should be about nine confederate soldiers on it, including Capt. Cordona.
When McNally is carrying Shasta, Cordona is leading the way to the stairs. When the camera angle changes, McNally is in front of Cordona.
When Col. McNally, Capt. Pierre Cordona, and Shasta Delaney awake in their camp at the burial site, it is morning, but the lack of shadows would indicate a time closer to midday.
When they leave the jail for the prisoner exchange they say that it is an hour after sun up, but when they reach the street their shadows are almost vertical showing that it is actually around noon.
When McNally, Cardona and Shasta are in Cardona's room and Shasta is just waking up after fainting, she sits up and the covers fall down to her waist. Then a distant scene is shown and the covers are around her neck. A close up scene then follows and the covers are around her waist again.
The cap and ball revolvers used in the Civil War could be sealed with beeswax and tallow to protect the percussion caps and powder from rain, but could not withstand being submerged in water for very long. In the movie, at the 29 minute mark the Confederate sergeant has concealed himself, with his pistol, underwater in the river, while breathing through a hollow reed. Depending on how long a submersion, the firing of that pistol was iffy.
Commonly thought as a mistake, (that Ketchum's pants don't show any scorch marks from the fire), Ketchum is shown buckling his belt on a different color pair of pants that he has obviously changed into just as they get ready to leave.
At about 1:41 when the group is about to leave the jail there is a large container with a big knob on top. John Wayne has a cup in his hand that obviously has no bottom. He sets the cup right down over the knob on the container.
If you watch carefully, John Wayne's character turns the cup upside down as he places it on the coffee urn. Thus it covers the knob on the top of the urn.
Leaving Ketchum's home, a body double is used for John Wayne. There seems to be no reason for it as it is a benign scene requiring very little physical exertion.
Several times during the film cast members make the classic protestant mistake of confusing the word "cavalry" (mounted soldiers) with "calvary" (site of the crucifixion).
In the final gunfight right after John Wayne gets shot in the leg and goes back into the building, he draws the hammer back on his rifle and shoots again. This would have been a spent round, as cocking the rifle would have reset the hammer. Seconds later after the dynamite explodes, he again draws back the hammer to fire.
When uncoupling the train from the locomotive the rebels pull up on a lever opening the knuckle coupler and releasing the car. At the time of the Civil War railroads used a link and pin coupling system. The knuckle coupler was invented by Eli Janney in 1873, eight years after the civil war ended. They are still in use today.
In the railroad track greasing scene, some of the Confederate cavalrymen are wearing bandoliers containing post Civil War metallic cartridges.
All of the major characters in the film are seen wearing/using Colt Single Action Army revolvers shortly after the civil war ends (1865). The gun wasn't introduced until eight years later (1873).
Close up of telegraph equipment shows a stamp from the E.F. Johnson Company, Waseca, Minnesota. Waseca was founded in 1867, two years after the war ended. The E.F. Johnson Co. was founded in 1923 by Edgar F. Johnson sixty years after the war ended, as per Wikipedia articles on each.
Most of the repeating rifles being used are Winchester model 94's, introduced many years after the time that the movie is set.
The wrong sound effect is used for Phillips' rifle when he is at his ranch. What is heard is the sound that is used for Phillips' shotgun.
When Wayne is walking up the stairs, spurs are heard jangling, but when he walks up there are no spurs are on his boots.
Many scenes that take place "in Texas" have saguaro cacti in
them. Saguaros only grow in parts of Arizona and Mexico; they don't grow in Texas.
While the filming location was in Arizona, it was set in Texas, but there are no Saguaro cactus in Texas. They are indigenous to Arizona and New Mexico.
When Shasta Delaney wakes up from fainting in Cordona's hotel room she has never been introduced or heard John Wayne's character's name and yet she calls him Mr. McNally.