Although they are difficult to spot, the security monitors in the Republic military prison show small images of Seperatist prisoners such as Wat Tambor (captured at the end of Season One), Poggle the Lesser (captured in Season Two) and General Whorm Loathsom (captured in Star Wars: The Clone Wars (2008)) as well as an unidentified tactical droid.
The episode titles for this story arc are all plays on Alfred Hitchcock movies: Sabotage (Sabotage (1936)), The Jedi Who Knew Too Much (The Man Who Knew Too Much (1956)), To Catch A Jedi (To Catch a Thief (1955)), and The Wrong Jedi (The Wrong Man (1956)).
The 'Jedi fortune cookie' message that opens the show reads "Courage begins by trusting oneself."