In the opening title sequence, Annie is seen boarding the 1 train at 125th St. She then departs a 6 train at Grand Central and then exits at Franklin Street back on the 1 train. She then goes to a restaurant on 12th St. Annie would not have to had to get off the 1 train at all nor would she have gone to Grand Central crosstown at all. Franklin Street is also too far south on the 1 train for 12th Street in Greenwich Village.
When Mr.Stacks and the rest of the group are chasing down the car that Annie is in, they cross the George Washington Bridge. This bridge connects New York City to New Jersey. After the car passes the bridge into New Jersey, cop cars that say NYPD start to follow it, instead of New Jersey police cars. Also, after they cross the George Washington Bridge, they immediately enter Liberty State Park in Jersey City, which lies more than 20 miles to the south and not far from the Holland Tunnel.
When Guy shows the clip of Will saving Annie on the screen he says that someone recorded it and put it on the internet. However, the video was shown from the front angle of the van when it was approaching then followed by from the side of the van when Will pulled Annie out, exactly the same edit the audience saw in the movie. If it were recorded on the phone by the bystander it would only feature one angle.