When Lincoln points the gun to Agent Mahone after they fight, he says "Toss me the handcuffs..". Afterwards, we see a flashback to that scene. In the flashback, Lincoln now says "Give me the handcuffs..".
When Michael arrives at Fin Del Camino, he has several flashbacks of T-Bag. One of these, from episode 1.12, "Odd Man Out", is of him slashing Abruzzi's throat. But not only was Michael not present for this, Abruzzi never told him that T-Bag was responsible for it.
When Mahone is pretending to be Sucre and intercepts the messages from goldfinch.net you see that he reads the following line: "I'm in. Let me know when you get there. Michael" but on the actual form in real life it just says: "I'm in. Let me know when you get there." So without "Michael".