Mighty Ducks' manager Phil tells police captain Klegghorn about the team's origin. Puckworld was a peaceful hockey-loving duck planet. Then one day evil Saurians took over. A group of young brave friends forms a resistance movement.
The resistance attempts to attack Saurian leader Overlord Lord Dragaunus, but his and their spaceship end up in a wormhole that takes both ships to Earth. The alien ducks decide to live off of hockey, as they look for Dragaunus.
Dragaunus turns a hockey player with a grudge against the Ducks into a monster and teams him up with a second monster that can manipulate electricity. Grin's background is revealed and zen-like nature tested.
In this tribute to Dungeons and Dragons tabletop rpg and indie comic book Elfquest, the Ducks find themselves in an alternate reality where magic rules and Prince Borg leads a revolt against a usurper - evil dragon-wizard Asteroth.
Wildwing loses his faith in his leadership skills and quits being the Ducks leader. The rest of the team tries out his position with expected results. Meanwhile, Dragaunus unleashes a plantlike alien creature on the city.
In this tribute to Back to the Future and Star Wars, future Phil contacts the Ducks and warns them that Dragaunus will conquer Earth and his lieutenant Phineas Viper will rule it. The Ducks must go to the future to change the past.
In this tribute to Superman, a superhero called Mondo-Man has appeared in the city and his targets are - the Ducks. The Ducks try to talk to him, but he is adamant that he's in the right. Could it be that Dragaunus is manipulating him?
A kid is targeted by Dragaunus for an unknown reason, so the Ducks put him under their protection. However, the kid turns out to be an annoying fan of theirs, so they must determine what Dragaunus needs with him, and quickly.
Dragaunus kidnaps Wildwing and uses his incredibly advanced high-tech goalie mask to find mythical Atlantis, where Balerium Crystals, the material he needs to go back to his and the Duck's dimension, are supposedly located.
Powerful evil wizard Asteroth from an alternate reality where magic rules arrives to the Ducks reality in search of his powerful amulet that the Ducks took from him in order to defeat him during the events of "Dungeons and Ducks".