Rebecca test a mind transfer procedure on unwilling Graft and sends him after the Phantom. Kit beats him and takes his memory chip, which shows Graft's tragic backstory and his torment over the war crimes he committed for the Madisons.
Kit recaps the events of Season 1 and reminisces about some of the key events in the lives of Rebecca Madison, her late husband Maxwell, her son Maxwell Jr. and their henchman Graft, that happened during its course.
Queen Nia hires professional big game hunter Gunnar to hunt down the Phantom. However, he has a different target in mind - the fabled Shadow Panther of the Ghost Jungle. But the big cat is not what it seems.
Kit gathers his allies Guran, Sagan, Heisenberg, Pavlova and even Mr. Cairo to try to stop Rebecca after she starts her endgame by annihilating Sean One. However, Kit has one more enemy to worry about - Doctor Jak.
Kit finds shocking footage that shows what caused the Sector Zero train crash. Wise street saxophonist and Heisenberg's best friend Betty tutors him on self-determination. Graft hacks Maxwell Sr.'s mind for information but this backfires.
After learning the shocking truth about his dad, Kit suffers an identity crisis but his friends try to help. The Skull Cave in Bengala, Africa might hold some answers. Meanwhile, newly revived Maxwell Sr. starts his apocalyptic endgame.
Doctor Jak accuses self-aware Heisenberg of being a terrorist leader who's organizing the androids (or biots) to rebel. Sagan is ordered to destroy it. Maxwell Jr.'s parents tell him to find a way to retake control over Heisenberg.
In an attempt to uncover how a smug hijacker obtained the Good Mark coin, Kit uses a virtual reality machine to search the chronicles of the Phantom of 1934. Meanwhile, Rebecca orders Graft to track the hijacker down.
Gorda tries to steal a cache of iridium from the Madisons' Maximum, Inc. corporation behind their back. They find out about it and anonymously tip off the Phantom to help them track her down, so they can deal with both of them for good.
Sparks goes to school to learn geography. Maxwell Jr. uses trackers to locate the Phantom. Rebecca tries to smuggle seemingly normal rare Brazilian roses into Metropia and Gorda wants to know why. So does the Phantom.
In the series finale, Kit finally learns the whole truth behind the Zero Sector incident and his father's actions, while Rebecca finally uses her biot androids to take over Metropia. Will the Phantom finally bring her and her allies down?