When originally shown on network television, deleted scenes were added to pad out the running time and for content. The following is a list of said scenes. 1. When Ben and Flo get ready to go to church, their mean neighbor Mrs.Perkins tells them that their cat defecated in her tulips and orders Ben to clean it up. Though he objects to it, Flo reminds him that she doesn't want to be excluded from the social parties Mrs. Perkins throws. 2. Once at church, Ben confesses to the priest in the pulpit that he and Flo want to have a child, so the minister tells him that the St. Brutus Orphanage has an adoption service and has recommended him, but Ben tells him that Flo won't accept anyone else's child, causing the priest to disgustedly end their session. 3. An extended dialogue scene at Mr. Peabody's adoption office has him, Ben and Flo arguing about how their child should look. 4.A scene of Junior talking to the Mother Supirior as he is packing. 5. During Martin Beck's psychological examination (once the doctor has escorted the warden out of the room), he has a flashback about how he thinks.he was blamed for a crime that somebody else did and is shown in his prison cell listening to the chaplain's final words to him, as well as a guard giving Martin a yellow bow tie-shaped cake. He is then shown walking to the electric chair, but manages to force the warden into it. 6. A short dialogue scene has Roy and his family loading up their Jeep for the camping trip with Roy telling Ben to hurry up. 7. Ben goes out to the porch to tell Junior that he is laying down the law for his bad behavior until he notices a picture Junior painted consisting of Ben knocking out Roy with the frying pan. Junior protests that he is only pretending to be his friend and that no one cares about him but himself. Ben then reminds him that he's not alone anymore and that he has got a friend(Ben) to talk to. He then gets his foot caught in the paint-filled cake pan as Junior starts laughing hysterically. 8. A long sequence has Junior terrorizing the milkman and the paperboy with a remote-controlled airplane, with Ben ending up getting the brunt of the abuse. 9. After Ben looks at the picture Junior made for him, Martin calls Ben and tells him he has a half-hour to come up with $100,000 for the ransom, as a way to see Junior and Flo again, followed by Martin telling Junior he's not planning to hurt Ben once he arrives with the money. 10. When Ben races through the circus to deliver the ransom money. A little girl asks Mother Superior, who obviously took the children on a field trip there, if that was the man who adopted Junior. When the nun notices Ben pushing and knocking people out of the way, Mother Superior replies, "Darn,that kid works fast!" 11.A scene where the bearded lady tells Martin he called her his little kumquat.
The 1991 video version included a short promo during the vertical THE END title card, the theatrical version had it horizontal, having Junior peek out of the END part reminding the viewer not to miss the release of PROBLEM CHILD 2 and appearing front and center explaining he has to go to film a big scene, leading to the director saying action, crashing sounds, and Ben shouting "Junior".
The version that airs on the Hub network is based on the USA Network version that has the "bonus footage" added in the movie, but makes several additional edits. Amongst these are: Big Ben's reference to the "Japs" and the "Hirohito Corporation" are removed, and Big Ben's comments to Little Ben about artificial insemination are edited somewhat (though the line about taking his sperm to someone who knows what to do with it is still intact).