When Godzilla comes ashore at Abarishi a scene of him walking past a lighthouse and smashimng it with his tail was cut.
After Godzilla's first confrontation with Biollante in Lake Ashino in the which is set ablaze by Godzilla's radioactive breath, spores from the plant creature shower the surrounding countryside causeing flowers to suddenly bloom.
Originally Godzilla was to atack the Osaka's Kansie airport, which was under construction at the time of filming, but permission could not be obtained. Instead Godzilla and Miki engage in a telepatch battle near a heliport for the site in the Ise Channel.
A discarded concept was to have Biollante attempt to physically absorb Godzilla during the climatic battle. This was scrapped due to time and budgetary considerations but was the concept was visualised for the climax of 'Godzilla 2000'.