My favorite cartoons of the 90s.

In Chronological order. Any of the ones in the 80s were ones I actually watched into the 90s, so I included them.
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1.
The Transformers (1984 TV Series)
    1 2 3 4 5 6 7 8 9 10 8.0/10 X  
Two opposing factions of transforming alien robots engage in a battle that has the fate of Earth in the balance. (30 mins.)
Director: Peter Wallach
“ Okay, I was born the year after this show came on, but I watched it in the mid-90s on something called "The Power Block," so I felt it was worth including. ” - Dyonus
 
2.
Muppet Babies (1984 TV Series)
    1 2 3 4 5 6 7 8 9 10 7.6/10 X  
The Muppets, as babies, have adventures with their imaginations inside their nursery. (60 mins.)
 
3.
Teenage Mutant Ninja Turtles (1987 TV Series)
    1 2 3 4 5 6 7 8 9 10 8.0/10 X  
The adventures of a quartet of humanoid warrior turtles and their friends. (30 mins.)
“ I realize this series was created in the late 80s, but as I was only 3 when it came on, I did most of my watching in the 90s, so I'm counting it. ” - Dyonus
 
4.
DuckTales (1987 TV Series)
    1 2 3 4 5 6 7 8 9 10 8.1/10 X  
The globe-trotting treasure-hunting money-making adventures of billionaire Scrooge McDuck and his nephews. (23 mins.)
 
5.
Garfield and Friends (1988 TV Series)
    1 2 3 4 5 6 7 8 9 10 7.3/10 X  
Stories about Garfield the cat, Odie the dog, their owner Jon and the trouble they get into, and Orson the Pig and his adventures on a farm with fellow farm animals. (30 mins.)
 
6.
Chip 'n' Dale Rescue Rangers (1989 TV Series)
    1 2 3 4 5 6 7 8 9 10 7.6/10 X  
Disney's fun-loving chipmunks are reimagined as the leaders of a team of detectives/crime-fighters, rounding out the team are two mice, Gadget Hackwrench and Monterey Jack and Zipper, a fly. (22 mins.)
 
7.
Attack of the Killer Tomatoes (1990 TV Series)
    1 2 3 4 5 6 7 8 9 10 6.4/10 X  
A group of people thwart a mad scientist trying to take over the world with evil mutated tomatoes that he can change into people. (23 mins.)
 
8.
The Simpsons (1989 TV Series)
    1 2 3 4 5 6 7 8 9 10 8.8/10 X  
The satiric adventures of a working-class family in the misfit city of Springfield. (22 mins.)
 
9.
The Super Mario Bros. Super Show! (1989 TV Series)
    1 2 3 4 5 6 7 8 9 10 6.3/10 X  
The Mario Brothers, Princess Toadstool, and Toad go on various adventures while battling the evil King Koopa. (30 mins.)
 
10.
Merrie Melodies: Starring Bugs Bunny and Friends (1990 TV Series)
    1 2 3 4 5 6 7 8 9 10 8.4/10 X  
In celebration of Bugs Bunny's fiftieth birthday, this television series, broadcast on weekdays, consisted... (23 mins.)
 
11.
Tiny Toon Adventures (1990 TV Series)
    1 2 3 4 5 6 7 8 9 10 7.6/10 X  
The adventures of a new generation of Warner Bros. Looney Tunes characters.
 
12.
Bobby's World (1990 TV Series)
    1 2 3 4 5 6 7 8 9 10 7.4/10 X  
A boy named Bobby Generic creates adventures using his overactive imagination. (30 mins.)
 
13.
TaleSpin (1990 TV Series)
    1 2 3 4 5 6 7 8 9 10 7.7/10 X  
Baloo the Bear from the Jungle Book is cast as a 1930's Pacific Islands bush pilot. (30 mins.)
 
14.
Taz-Mania (1991 TV Series)
    1 2 3 4 5 6 7 8 9 10 6.9/10 X  
The daily satirical adventures of the Looney Tunes star The Tazmanian Devil, along with his extended family, friends, and enemies on the island of Tasmania. (30 mins.)
 
15.
Little Shop (1991 TV Series)
    1 2 3 4 5 6 7 8 9 10 5.7/10 X  
A nerdy junior high student who works in a floral shop after school finds a fossilized talking Venus Fly Trap with the ability to hypnotize people.
 
16.
Rugrats (1990 TV Series)
    1 2 3 4 5 6 7 8 9 10 7.5/10 X  
The cartoon misadventures of four babies and their snotty older cousin as they face the things in life they don't understand. (30 mins.)
 
17.
Doug (1991 TV Series)
    1 2 3 4 5 6 7 8 9 10 7.5/10 X  
The life of a young boy as he meets friends, falls in love, maneuvers his way through grade 6 and writes all about it in his journal. (30 mins.)
 
18.
Samurai Pizza Cats (1990 TV Series)
    1 2 3 4 5 6 7 8 9 10 7.6/10 X  
The feline staff of a pizza joint fight crime as superheroes when called for. (30 mins.)
 
19.
Bucky O'Hare and the Toad Wars! (1991 TV Series)
    1 2 3 4 5 6 7 8 9 10 7.5/10 X  
Bucky and his crew must fight the evil toads who are bent on taking over the universe. (30 mins.)
“ I didn't know what a miniseries was when I was a kid and was really disappointed when it ended. ” - Dyonus
 
20.
Darkwing Duck (1991 TV Series)
    1 2 3 4 5 6 7 8 9 10 7.7/10 X  
A bumbling superhero battles crime with the help of his daughter and pilot sidekick. (30 mins.)
 
21.
X-Men (1992 TV Series)
    1 2 3 4 5 6 7 8 9 10 8.5/10 X  
A team of mutant superheroes fight for justice and human acceptance in the Marvel Comics universe. (23 mins.)
 
22.
Batman: The Animated Series (1992 TV Series)
    1 2 3 4 5 6 7 8 9 10 9.0/10 X  
The Dark Knight battles crime in Gotham City with occasional help from Robin and Batgirl. (23 mins.)
“ This show is one of the main reasons I'm as much of a Batman fan as I am today. ” - Dyonus
 
23.
Super Dave: Daredevil for Hire (1992 TV Series)
    1 2 3 4 5 6 7 8 9 10 7.5/10 X  
(30 mins.)
Director: Joe Barruso
 
24.
Eek! the Cat (1992 TV Series)
    1 2 3 4 5 6 7 8 9 10 7.4/10 X  
The comical misadventures of Eek, a kind-hearted purple cat who finds himself in constant mortal danger. (30 mins.)
Director: Jamie Whitney
 
25.
Marsupilami (1993 TV Series)
    1 2 3 4 5 6 7 8 9 10 6.3/10 X  
The often off the wall, nonsensical, non-speaking antics of an animated creature with an enormously long tail and his life in Polombia. (30 mins.)
 
26.
Animaniacs (1993 TV Series)
    1 2 3 4 5 6 7 8 9 10 7.9/10 X  
Ensemble cast of off-the-wall Warner Brothers characters, appearing in a wide variety of roles. Wakko... (21 mins.)
 
27.
Bonkers (1993 TV Series)
    1 2 3 4 5 6 7 8 9 10 7.0/10 X  
Bonkers, an out of work cartoon, joins the Hollywood PD and helps his partners (first a doughnut munching stressbomb, then a beautiful blonde) catch cartoon criminals. (30 mins.)
 
28.
Bump in the Night (1994 TV Series)
    1 2 3 4 5 6 7 8 9 10 8.2/10 X  
The misadventures of a small green monster named Mr. Bumpy, a blue monster named Squishington, and a rag doll named Molly Coddle in a bedroom of a 10 year old boy. (25 mins.)
 
29.
Spider-Man (1994 TV Series)
    1 2 3 4 5 6 7 8 9 10 8.3/10 X  
A young man with spider-like abilities fights crime as a superhero in New York City while trying to have a normal personal life. (23 mins.)
 
30.
ReBoot (1994 TV Series)
    1 2 3 4 5 6 7 8 9 10 7.9/10 X  
In the inner computer world of Mainframe, a guardian program sprite and his friends defend the system from threats from viruses and the User. (30 mins.)
Director: Owen Hurley
 
31.
Where on Earth Is Carmen Sandiego? (1994 TV Series)
    1 2 3 4 5 6 7 8 9 10 7.3/10 X  
The world famous thief, Carmen Sandiego, plays an intricate game of cat and mouse with teen ACME detectives, Zack and Ivy. (21 mins.)
 
32.
The Tick (1994 TV Series)
    1 2 3 4 5 6 7 8 9 10 7.9/10 X  
An invulnerable, somewhat dim, superhero protects The City from all manner of evil-doers. (30 mins.)
 
33.
Aladdin (1994 TV Series)
    1 2 3 4 5 6 7 8 9 10 7.2/10 X  
Aladdin, the clever hero of Agrabah, continues his adventures with the help of his fiancee Princess Jasmine, his pet monkey Abu, Magic Carpet, Iago the greedy parrot, and of course his best friend the semi-cosmic Genie. (30 mins.)
 
34.
Pinky and the Brain (1995 TV Series)
    1 2 3 4 5 6 7 8 9 10 7.9/10 X  
A genius mouse and his stupid sidekick try to conquer the world each night. (30 mins.)
 
35.
Freakazoid! (1995 TV Series)
    1 2 3 4 5 6 7 8 9 10 7.6/10 X  
Washington, D.C. has a new defender: Freakazoid. The comedy (and sanity) never stops when he's around and he's only one of the weird heroes of the series! It's better than a nice tub of good things! (30 mins.)
 
36.
Life with Louie (1995 TV Series)
    1 2 3 4 5 6 7 8 9 10 8.3/10 X  
Adventures of Louie Anderson as a child, growing up with his sweet-hearted mother, his loud and war crazed father, his 10 siblings, and children at school who love to tease him. (30 mins.)
 
37.
Timon & Pumbaa (1995 TV Series)
    1 2 3 4 5 6 7 8 9 10 7.1/10 X  
The further misadventures of various Lion King characters. (30 mins.)
 
38.
Earthworm Jim (1995 TV Series)
    1 2 3 4 5 6 7 8 9 10 7.5/10 X  
An average Earthworm stumbles upon a supersuit that makes him a superheroic worm! (30 mins.)
 
39.
Tenchi Muyô! (1992 TV Series)
    1 2 3 4 5 6 7 8 9 10 7.8/10 X  
Every man needs a good woman. Tenchi Masaki has six. (30 mins.)
 
40.
Road Rovers (1996 TV Series)
    1 2 3 4 5 6 7 8 9 10 7.2/10 X  
Road Rovers is an animated action/adventure series starring the most buffed-up and powerful howling hounds ever to walk the planet... (30 mins.)
 
41.
Quack Pack (1996 TV Series)
    1 2 3 4 5 6 7 8 9 10 6.9/10 X  
The misadventures of Donald Duck and his rebellious teenage nephews with attitude, Huey, Dewey and Louie. (30 mins.)
 
42.
Beast Wars: Transformers (1996 TV Series)
    1 2 3 4 5 6 7 8 9 10 8.2/10 X  
The Transformers' war continues in an older time, through a new generation. On pliocenic Earth, the heroic Maximals and the evil Predacons battle for survival against each other and against a violent planet. (30 mins.)
 
43.
Arthur (1996 TV Series)
    1 2 3 4 5 6 7 8 9 10 7.5/10 X  
Based on the books by Marc Brown, these are the adventures of Arthur, an 8-year-old aardvark, and his family and friends as they grow up and learn how to be good neighbors to one another. (30 mins.)
“ I was in the 6th grade when this show came out, but I ended up watching it regularly because of the books. ” - Dyonus
 
44.
Mighty Ducks (1996 TV Series)
    1 2 3 4 5 6 7 8 9 10 6.4/10 X  
A team of humanoid duck ice hockey team/freedom fighters fight evil between games. (30 mins.)
 
45.
Pokémon (1997 TV Series)
    1 2 3 4 5 6 7 8 9 10 7.1/10 X  
Follows the adventure of Satoshi with his Pokemon, Pikachu and his friends to become the Pokemon master. (24 mins.)
 
46.
King of the Hill (1997 TV Series)
    1 2 3 4 5 6 7 8 9 10 7.2/10 X  
A straight laced propane salesman in Arlen, Texas tries to deal with the wacky antics of his family and friends, while also trying to keep his son in line. (30 mins.)
 
47.
The Adventures of Sam & Max: Freelance Police (1997 TV Series)
    1 2 3 4 5 6 7 8 9 10 8.0/10 X  
The continuing adventures of Sam the Bogart-like dog and Max the hyper-kinetic bunny.
 
48.
Recess (1997 TV Series)
    1 2 3 4 5 6 7 8 9 10 7.9/10 X  
Comic tales of a group of good friends, 4 boys and 2 girls, during breaks in primary school, as they grow up... (23 mins.)
 
49.
Pepper Ann (1997 TV Series)
    1 2 3 4 5 6 7 8 9 10 7.4/10 X  
Comedy about awkward teenager Pepper Ann, who only really has 2 friends, and manages to put other kids off by her slightly-nerdy behaviour... (30 mins.)
Director: Brad Goodchild
 
50.
Daria (1997 TV Series)
    1 2 3 4 5 6 7 8 9 10 8.0/10 X  
A smart and cynical girl goes through teenage life as a proud outsider in a world of mainly idiotic adolescents and condescending adults. (30 mins.)
Director: Karen Disher
“ I didn't even see this series until about 10 years later, but it's very good. ” - Dyonus
 
51.
Men in Black: The Series (1997 TV Series)
    1 2 3 4 5 6 7 8 9 10 6.9/10 X  
The continuing adventures of Agents K and J as they deal with problems with extraterrestrials in New York City. (25 mins.)
 
52.
South Park (1997 TV Series)
    1 2 3 4 5 6 7 8 9 10 8.8/10 X  
Follows the misadventures of four irreverent grade-schoolers in the quiet, dysfunctional town of South Park, Colorado. (22 mins.)
“ I didn't start watching this show until the 2000s, but I felt it was worth mentioning. ” - Dyonus
 
53.
Big Guy and Rusty the Boy Robot (1999 TV Series)
    1 2 3 4 5 6 7 8 9 10 7.6/10 X  
When under attack by evil aliens or an insane robot cult only Big Guy and Rusty can save America! (30 mins.)
Director: Nathan Chew
 
54.
Digimon: Digital Monsters (1999 TV Series)
    1 2 3 4 5 6 7 8 9 10 7.3/10 X  
A group of young teens is unexpectedly sent to the mysterious Digital World and paired up with their own powerful, morphing monster called the Digimon. Together the entire group set out on an adventure to fight evil and save the world. (24 mins.)
 
55.
Beast Machines: Transformers (1999 TV Series)
    1 2 3 4 5 6 7 8 9 10 6.9/10 X  
The Maximals awaken on their home planet of Cybertron and are chased by mindless Vehicons created by Megatron. The Maximals must free the planet from Megatron and restore it to its real way of living. (30 mins.)
 
56.
Family Guy (1999 TV Series)
    1 2 3 4 5 6 7 8 9 10 8.2/10 X  
In a wacky Rhode Island town, a dysfunctional family strive to cope with everyday life as they are thrown from one crazy scenario to another. (22 mins.)
 
57.
Batman Beyond (1999 TV Series)
    1 2 3 4 5 6 7 8 9 10 8.1/10 X  
Fueled by remorse and vengeance, a high schooler named Terry McGinnis revives the role of Batman. Under supervision of an elderly Bruce Wayne, he fights crime in a harsh futuristic Gotham. (23 mins.)
 
58.
The Weekenders (2000 TV Series)
    1 2 3 4 5 6 7 8 9 10 8.3/10 X  
The humorous Friday through Sunday misadventures of four best friends. (15 mins.)
“ Okay...so it's not from the 90s, but it was too close and too good not to be included. ” - Dyonus